My nexus one boot animation is delayed!

[ajam100]

one day when I was playing around with clockword mod and selected restart adbd(I thought it meant the adb daemon but I guess it means something else) in the advanced options area.Well I consider my self pretty tech smart and "advanced" for a 13 year old but I guess things happen. Now when I boot my nexus one the actual boot animation(not splash) is not showing for the first 3 quarters of the boot up. Then I thought I bricked my device because the screen wasn't showing the animation for 20 sec. Then I saw the touch-sensitve buttons light up and then 2 seconds later the animation apeared only for 2 seconds untill my device was booted. I tried overwriting the boot animation in both /system/media/ and in /device/local/ ad it had no effect. I dont know what to do. I am rooted using universal androot because I want to be able to unvoid my warrnaty. So my bootloader isn't unlocked. I am running Cyanogen Mod 6 and am loving it so far! But I am wondering what to do? Should I re-flash the rom? I tried pressing restart adbd again and it did nothing? i have not done a Nandroid restore because it will mess up my apps that are on the sdcard if i restore back. I dont know what to do!?!?!?!?!

[SliceBurgSlim]

Nandroid is probably your best bet. Why not just backup your apps with Titanium first? then Restore and Reinstall your apps.